For years, I used QuickBooks Enterprise for financial management, but a few years ago I began using Connectwise as my primary program for customer management, invoicing, and inventory management. QuickBooks was relegated to expense management and financial reporting. Connectwise syncs inventory transactions to QuickBooks in batches, but the inventory balances in QuickBooks never seem to align with Connectwise. This discrepancy typically grows to around $100,000 (against a total inventory value of $350,000), after which I correct it by performing a physical count and simultaneously adjusting QuickBooks.

I would like to understand: Is batch-syncing every inventory transaction to QuickBooks the accepted practice, or do most companies (we have annual sales of $15 million) prefer making monthly journal entries instead? Honestly, I don't care about the inventory figures shown in QuickBooks; I just want the month-end balance sheet to be accurate.